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  • Structure Analysis in ChemBio3D
    • Structure Analysis in ChemBio3D

    • Presenter: Jesse Gordon , Company: PerkinElmer Informatics
    • Duration: 45 min
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  • Many chemists and biologists know ChemBio3D as a molecular visualization tool. But it has also developed into a strong analytical tool. This webinar explores the analysis features as well as the advanced three-dimensional visualization features:

    • Atom Properties: color-code atoms within molecules by any atomic property, including calculated properties and custom-defined properties.
    • Structure Browser: scan through a list of small molecules (and their properties) that have been saved to a file and view the models on screen.
    • Model Explorer: change the "model settings" parameter table that ChemBio3D uses to create visual models.
    • PDB Import: find 3D protein structures from standard internet libraries, and explore in 3D with both "chemical intelligence" and "biological intelligence".
    • Protein-Ligand complexes: show binding site surfaces; dock ligands into binding sites; and explore fragments and backbones.
    • Perspective Tool: zooming in changes the visualization perspective; with depth fading, visualizes from inside the molecule.
    • Hydrogen Bonding: show intermolecular hydrogen bonds; or hide or show all hydrogen bonds.
    • Dihedral Driver: map the conformational space of a model by varying one or two dihedral angles.

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      • Visualization: surfaces; properties; and Explorer
      • 19 Min

      • Analysis: Energy minimization; MMFF94; Gaussian; MOPAC
      • 10 Min

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